To assess these lids first you should do some quick checking;
- The black or brown spots do not have hairs and with a simple scratch of a utensil it appears more like a "soot".
- There is no strong off odor to the contents of the jar.
- Appears that these spots are concentrated on the lid of the jar.
- When you opened the jar there was resistance in opening the lid.


If you look at the two pictures you can see there are scratches in the lid and also notice that the spots are localized to a specific place where there is an imperfection in the enamel.
I hope that this helps those of you that have had some concerns about why this is happening to your jars.